Bioinformatics Practical for Biochemists (WS 15/16)

Date:March 14-18, 2016
Title:An introduction to bioinformatics tools used in sequence & structure analysis
Description:This practical is the addition to the module "Bioinformatik für Lebenswissenschaftler"
(Modulkennziffer BIOINF 1910)
Prof. Dr. Andrei Lupas, Dr. Birte Höcker, Dr. Steffen Schmidt

 

 

01. DNA & Genomics

<media 2448 - internal-link "Opens internal link in current window">Lecture</media> (DNA & Genomics)

<media 2447 - internal-link "Opens internal link in current window">Tutorial</media> (Notebook & DNA Analysis)

<media 2446>Tutorial</media> (Gene Prediction)

02. Introduction to Proteins

<media 2383 - - "TEXT, BIBCP SS15 02 Lecture Intro to proteins, BIBCP_SS15_02_Lecture_Intro_to_proteins.pdf, 12.1 MB">Lecture</media> (Structure, Function, and Evolution)

<media 2384 - - "TEXT, BIBCP SS15 02a Tutorial Homology Databases, BIBCP_SS15_02a_Tutorial_Homology_Databases.pdf, 1.1 MB">Tutorial</media> (Homology, Information Gathering & Protein Domain Annotation)

<media 2449 - - "TEXT, BIBCP SS15 02b.Tutorial Homology Detection, BIBCP_SS15_02b.Tutorial_HomologyDetection.pdf, 706 KB">Tutorial</media> (MPI Toolkit & Remote Homology Detection)

03. Annotation of Sequence Features

<media 2450 - - "TEXT, BIBCP WS15 03 Sequences Structures short, BIBCP_WS15_03_Sequences_Structures_short.pdf, 6.9 MB">Lecture</media> (Of Sequences and Structures)

<media 2451 - - "TEXT, BIBCP WS15 03a Tutorial Sequence Features, BIBCP_WS15_03a_Tutorial_SequenceFeatures.pdf, 2.4 MB">Tutorial</media> (Sequence Features)

<media 2452>Tutorial</media> (Repeats)

04. Protein Classification

<media 2453 - - "TEXT, BIBCP WS15 04 Protein classification, BIBCP_WS15_04_Protein_classification.pdf, 3.9 MB">Lecture</media> (Protein Classification: phylogeny and clustering)

<media 2454>Tutorial/Tasks</media> (Clustering)

<media 2455>Tutorial</media> (Protein Structure Visualization)

05. Evolution & Design – Test Excerises

<media 2456 - - "TEXT, BIBCP WS15 05 Lecture Evolution Design, BIBCP_WS15_05_Lecture_Evolution_Design.pdf, 6.5 MB">Lecture</media> (Proteins: Evolution & Design)

Test Problems