Bioinformatics Practical for Biochemists (SS 15)

Date:September 21-25, 2015
Title:An introduction to bioinformatics tools used in sequence & structure analysis
Description:This practical is the addition to the module "Bioinformatik für Lebenswissenschaftler"
(Modulkennziffer BIOINF 1910)
Dr. Birte Höcker, Dr. Steffen Schmidt

 

 

01. DNA & Genomics

<media 2381 - - "TEXT, BIBCP SS14 01 DNA Lecture, BIBCP_SS14_01_DNA_Lecture.pdf, 2.3 MB">Lecture</media> (DNA & Genomics)

<media 2379 - - "TEXT, BIBCP SS14 01 DNA Tutorial Notebook DNA, BIBCP_SS14_01_DNA_Tutorial_Notebook_DNA.pdf, 1.3 MB">Tutorial</media> (Notebook & DNA Analysis)

<media 2380 - - "TEXT, BIBCP SS14 01 DNA Tutorial Gene Prediction, BIBCP_SS14_01_DNA_Tutorial_Gene_Prediction.pdf, 602 KB">Tutorial</media> (Gene Prediction)

02. Introduction to Proteins

<media 2383 - - "TEXT, BIBCP SS15 02 Lecture Intro to proteins, BIBCP_SS15_02_Lecture_Intro_to_proteins.pdf, 12.1 MB">Lecture</media> (Structure, Function, and Evolution)

<media 2384 - - "TEXT, BIBCP SS15 02a Tutorial Homology Databases, BIBCP_SS15_02a_Tutorial_Homology_Databases.pdf, 1.1 MB">Tutorial</media> (Homology, Information Gathering & Protein Domain Annotation)

<media 2385 - - "TEXT, BIBCP SS15 02b.Tutorial Homology Detection, BIBCP_SS15_02b.Tutorial_HomologyDetection.pdf, 706 KB">Tutorial</media> (MPI Toolkit & Remote Homology Detection)

03. Annotation of Sequence Features

<media 2386 - - "TEXT, BIBCP SS15 03 Lecture Of Sequences and Structures, BIBCP_SS15_03_Lecture_Of_Sequences_and_Structures.pdf, 4.1 MB">Lecture</media> (Of Sequences and Structures)

<media 2387 - - "TEXT, BIBCP SS15 03a Tutorial Sequence Features, BIBCP_SS15_03a_Tutorial_SequenceFeatures.pdf, 2.9 MB">Tutorial</media> (Sequence Features)

<media 2388 - - "TEXT, BIBCP SS15 03b Tutorial Repeats, BIBCP_SS15_03b_Tutorial_Repeats.pdf, 5.0 MB">Tutorial</media> (Repeats)

04. Protein Classification

<media 2389 - - "TEXT, BIBCP SS15 04 Protein Classification Lecture, BIBCP_SS15_04_ProteinClassification_Lecture.pdf, 2.7 MB">Lecture</media> (Protein Classification: phylogeny and clustering)

<media 2390 - - "TEXT, BIBCP SS15 04a Tutorial Tasks Clustering, BIBCP_SS15_04a_Tutorial_Tasks_Clustering.pdf, 74 KB">Tutorial/Tasks</media> (Clustering)

<media 2391 - - "TEXT, BIBCP SS15 04b Tutorial Stucture Visualization, BIBCP_SS15_04b_Tutorial_StuctureVisualization.pdf, 1.0 MB">Tutorial</media> (Protein Structure Visualization)

05. Evolution & Design – Test Excerises

<media 2392 - - "TEXT, BIBCP SS15 05 Lecture Evolution Design, BIBCP_SS15_05_Lecture_Evolution_Design.pdf, 4.8 MB">Lecture</media> (Proteins: Evolution & Design)

Test Problems