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Structures

Structures obtained by X-ray crystallographyNMR spectroscopyComputational methods.

X-ray crystallography structures

Name
Description
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RSCB PDB
Cereblon
Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with Thalidomide, Y101F mutant
4V32.pdb
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Cereblon
Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with Deoxyuridine
4V31.pdb
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Cereblon
Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with Lenalidomide
4V30.pdb
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Cereblon
Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with Thalidomide
4V2Y.pdb
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NAGK-PII
N-acetylglutamate kinase from Arabidopsis thaliana in complex with PII from Chlamydomonas reinhardtii
4USJ.pdb
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PII-MgATP-2og
Nitrogen regulatory protein PII from Chlamydomonas reinhardtii in complex with MgATP and 2-oxoglutarate
4USI.pdb
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PII
Nitrogen regulatory protein PII from Chlamydomonas reinhardtii in unliganded state
4USH.pdb
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Af1503-sol
Transmembrane receptor Af1503 from Archaeoglobus fulgidus engineered for solubility
4CQ4.pdb
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Af1503-Tsr
Structure of Hamp(AF1503) - Tsr fusion - Hamp (A291V) mutant
3ZX6.pdb
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FtsH-N
Escherichia coli FtsH hexameric N-domain
4V0B.pdb
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ANDREI-N-LVPAS
ANDREI-N-LVPAS fused to CGN4 adaptors
4C46.pdb
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SadB
Salmonella enterica trimeric lipoprotein SadB
4C47.pdb
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SadA K2
Salmonella enterica SadA 303-358 fused to GCN4 adaptors
3ZMF.pdb
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SadA K14
Salmonella enterica SadA 1185-1386 fused to GCN4 adaptors
3YO3.pdb
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SadA K12
Salmonella enterica SadA 255-358 fused to GCN4 adaptors
2YO2.pdb
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SadA K9-cfII
Salmonella enterica SadA 1049-1304 fused to GCN4 adaptors
2YO1.pdb
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SadA K9-cfI
Salmonella enterica SadA 1049-1304 fused to GCN4 adaptors
2YO0.pdb
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SadA K5
Salmonella enterica SadA 823-947 fused to a GCN4 adaptor
2YNZ.pdb
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SadA K1
Salmonella enterica SadA 255-302 fused to GCN4 adaptors 
2YNY.pdb
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EIBD
E. coli IgG-binding fragment 160-418 of trimeric autotransporter adhesin 
2XQH.pdb
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EIBD
E. coli IgG-binding protein D 391-438 fused to GCN4 adaptors 
2XZR.pdb
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HAMP mutant
The mechanisms of HAMP-mediated signaling in transmembrane receptors-A291I mutant
2Y20.pdb
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HAMP mutant
The mechanisms of HAMP-mediated signaling in transmembrane receptors-A291V mutant
2Y21.pdb
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HAMP mutant
The mechanisms of HAMP-mediated signaling in transmembrane receptors-A291F mutant
2Y0T.pdb
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HAMP mutant
The mechanisms of HAMP-mediated signaling in transmembrane receptors-A291C mutant
2Y0Q.pdb
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KH-CPSF
Crystal structure of a dimeric archaeal cleavage and polyadenylation specificity factor
2XR1.pdb
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HAMP mutant
The high resolution structure of a dimeric Hamp-Dhp fusion displays strong asymmetry
3ZRX.pdb
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HAMP mutant
The structure of the dimeric Hamp-Dhp fusion A291V mutant
3ZRW.pdb
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HAMP mutant
The high resolution structure of a dimeric Hamp-Dhp fusion displays asymmetry
3ZRV.pdb
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yadA M4
Strong right-handed to canonical left-handed sc in a conserved cc segment of trimeric autotransp. adhes.
3LT6.pdb
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yadA M3
Strong right-handed to canonical left-handed sc in a conserved cc segment of trimeric autotransp. adhes.
3LT7.pdb
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yadA M1
Strong right-handed to canonical left-handed sc in a conserved cc segment of trimeric autotransp. adhes.
3H7Z.pdb
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yadA
Strong right-handed to canonical left-handed sc in a conserved cc segment of trimeric autotransp. adhes.
3H7X.pdb
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CGN4 mutant
CGN4 leucine zipper mutant with three IXXNTXX motifs coordinating chloride and nitrate
2WQ3.pdb
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CGN4 mutant
CGN4 leucine zipper mutant with three IXXNTXX motifs coordinating iodide
2WQ2.pdb
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CGN4 mutant
CGN4 leucine zipper mutant with three IXXNTXX motifs coordinating bromide
2WQ1.pdb
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CGN4 mutant
CGN4 leucine zipper mutant with three IXXNTXX motifs coordinating chloride
2WQ0.pdb
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CGN4 mutant
CGN4 leucine zipper mutant with two VXXNXXX motifs coordinating chloride
2WPZ.pdb
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CGN4 mutant
CGN4 leucine zipper mutant with one VXXNXXX motif coordinating chloride
2WPY.pdb
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Sada K3B-V2
Salmonella Enterica Sada 483-523 fused to CGN-4 adaptors
2WPS.pdb
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Sada K3B-V1
Salmonella Enterica Sada 483-523 fused to CGN-4 adaptors
2WPR.pdb
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Sada K3
Salmonella Enterica Sada 479-519 fused to CGN-4 adaptors
2WPQ.pdb
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ARC-N
ARC-NΔcc (78-227) from Rhodococcus erythropolis
2WFW.pdb
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PAN-N
Proteasome-activating nucleotidase (PAN) N-domain (57-134) from Archaeoglobus fulgidus fused to GCN4
2WG5.pdb
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PAN-N (P61A)
Proteasome-activating nucleotidase (PAN) N-domain (57-134) from Archaeoglobus fulgidus fused to GCN4
2WG6.pdb
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SpoVT-FL
Crystal Structure of B. Subtilis SpoVT
2W1T.pdb
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SpoVT-CT domain
Crystal Structure of the C-Terminal Domain of B. Subtilis SpoVT
2W1R.pdb
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BadA
Structure of two domains of the head of the Bartonella adhesin BadA
3D9X.pdb
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Mj0056
Riboflavin Kinase Mj0056 from Methanocaldococcus Jannaschii in Complex with PO4
2VBS.pdb
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Mj0056
Riboflavin Kinase Mj0056 from Methanocaldococcus Jannaschii in Complex with CDP and PO4
2VBT.pdb
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Mj0056
Riboflavin Kinase Mj0056 from Methanocaldococcus Jannaschii in Complex with CDP
2VBU.pdb
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Mj0056
Riboflavin Kinase Mj0056 from Methanocaldococcus Jannaschii in Complex with CDP and FMN
2VBV.pdb
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NMR structures

Name
Description
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RSCB PDB
Yme1-N
The N-domain of the AAA metalloproteinase Yme1 from Saccharomyces cerevisiae
2MV3.pdb
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FtsH-N
The solution structure of the FtsH periplasmic N-domain
2MUY.pdb
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A291F variant
The solution structure of the HAMP domain of the hypothetical transmembrane receptor Af1503 
2L7I.pdb
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Af1503 HAMP
The solution structure of the HAMP domain of the hypothetical transmembrane receptor Af1503
2L7H.pdb
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A219F var
Solution structure of the chimeric Af1503 HAMP-EnvZ DHp homodimer; A219F variant
2LFS.pdb
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DHp HomDim
Solution structure of the chimeric Af1503 HAMP-EnvZ DHp homodimer
2LFR.pdb
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Mj0056
Solution structure of Mj0056
2P3M.pdb
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PhS018
The solution structure of PHS018 from Pyrococcus horikoshii (22 models)
2GLW.pdb
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AbrB
The Solution Structure Of The N-Domain Of The Transcription Factor AbrB (22 models)
1YSF.pdb
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AbrB
The Solution Structure Of The N-Domain Of The Transcription Factor AbrB (mean)
1YFB.pdb
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Computational models

Name
Description
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Plasm.Hsp101
Hexameric model of Plasmodium Hsp101 assembled from monomers modeled by homology to 1QVR
PfClpB-6mer.pdb
Thermus ClpB
Hexameric model of Thermus thermophilus ClpB based on the monomeric structure 1QVR
ClpBmod.pdb
Apoptosome
Ring model of the apoptosome. The monomer of Apaf-1 (1Z6T) was modeled as a heptameric ring structure and placed in the center of the domain model by C. Akey and coworkers (PubMed)
Apopt.mod.pdb
BadA
Model structure of the full head of the BadA fiber
BadAhmod.pdb
YadA
New model structure of the full YadA fiber
YadAmodv2.pdb
YadA
Old model structure of the full YadA fiber
YadAmod.pdb
OmpW
Model structure of the outer membrane beta barrel protein OmpW
OmpW mod.pdb