Structures

Structures obtained by X-ray crystallographyNMR spectroscopyComputational methods.

X-ray crystallography structures

NameDescriptionDownloadRSCB PDB
CereblonCereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with Thalidomide, Y101F mutant4V32.pdbOpens external link in new windowPDB
CereblonCereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with Deoxyuridine4V31.pdbOpens external link in new windowPDB
CereblonCereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with Lenalidomide4V30.pdbOpens external link in new windowPDB
CereblonCereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with Thalidomide4V2Y.pdbOpens external link in new windowPDB
NAGK-PIIN-acetylglutamate kinase from Arabidopsis thaliana in complex with PII from Chlamydomonas reinhardtii4USJ.pdbOpens external link in new windowPDB
PII-MgATP-2ogNitrogen regulatory protein PII from Chlamydomonas reinhardtii in complex with MgATP and 2-oxoglutarate4USI.pdbOpens external link in new windowPDB
PIINitrogen regulatory protein PII from Chlamydomonas reinhardtii in unliganded state4USH.pdbOpens external link in new windowPDB
Af1503-solTransmembrane receptor Af1503 from Archaeoglobus fulgidus engineered for solubility4CQ4.pdbOpens external link in new windowPDB
Af1503-TsrStructure of Hamp(AF1503) - Tsr fusion - Hamp (A291V) mutant3ZX6.pdbOpens external link in new windowPDB
FtsH-NEscherichia coli FtsH hexameric N-domain4V0B.pdbOpens external link in new windowPDB
ANDREI-N-LVPASANDREI-N-LVPAS fused to CGN4 adaptors4C46.pdbOpens external link in new windowPDB
SadBSalmonella enterica trimeric lipoprotein SadB4C47.pdbOpens external link in new windowPDB
SadA K2Salmonella enterica SadA 303-358 fused to GCN4 adaptors3ZMF.pdbOpens external link in new windowPDB
SadA K14Salmonella enterica SadA 1185-1386 fused to GCN4 adaptors3YO3.pdbOpens external link in new windowPDB
SadA K12Salmonella enterica SadA 255-358 fused to GCN4 adaptors2YO2.pdbOpens external link in new windowPDB
SadA K9-cfIISalmonella enterica SadA 1049-1304 fused to GCN4 adaptors2YO1.pdbOpens external link in new windowPDB
SadA K9-cfISalmonella enterica SadA 1049-1304 fused to GCN4 adaptors2YO0.pdbOpens external link in new windowPDB
SadA K5Salmonella enterica SadA 823-947 fused to a GCN4 adaptor2YNZ.pdbOpens external link in new windowPDB
SadA K1Salmonella enterica SadA 255-302 fused to GCN4 adaptors 2YNY.pdbOpens external link in new windowPDB
EIBDE. coli IgG-binding fragment 160-418 of trimeric autotransporter adhesin 2XQH.pdbOpens external link in new windowPDB
EIBDE. coli IgG-binding protein D 391-438 fused to GCN4 adaptors 2XZR.pdbOpens external link in new windowPDB
HAMP mutantThe mechanisms of HAMP-mediated signaling in transmembrane receptors-A291I mutant2Y20.pdbOpens external link in new windowPDB
HAMP mutantThe mechanisms of HAMP-mediated signaling in transmembrane receptors-A291V mutant2Y21.pdbOpens external link in new windowPDB
HAMP mutantThe mechanisms of HAMP-mediated signaling in transmembrane receptors-A291F mutant2Y0T.pdbOpens external link in new windowPDB
HAMP mutantThe mechanisms of HAMP-mediated signaling in transmembrane receptors-A291C mutant2Y0Q.pdbOpens external link in new windowPDB
KH-CPSFCrystal structure of a dimeric archaeal cleavage and polyadenylation specificity factor2XR1.pdbOpens external link in new windowPDB
HAMP mutantThe high resolution structure of a dimeric Hamp-Dhp fusion displays strong asymmetry3ZRX.pdbOpens external link in new windowPDB
HAMP mutantThe structure of the dimeric Hamp-Dhp fusion A291V mutant3ZRW.pdbOpens external link in new windowPDB
HAMP mutantThe high resolution structure of a dimeric Hamp-Dhp fusion displays asymmetry3ZRV.pdbOpens external link in new windowPDB
yadA M4Strong right-handed to canonical left-handed sc in a conserved cc segment of trimeric autotransp. adhes.3LT6.pdbOpens external link in new windowPDB
yadA M3Strong right-handed to canonical left-handed sc in a conserved cc segment of trimeric autotransp. adhes.3LT7.pdbOpens external link in new windowPDB
yadA M1Strong right-handed to canonical left-handed sc in a conserved cc segment of trimeric autotransp. adhes.3H7Z.pdbOpens external link in new windowPDB
yadAStrong right-handed to canonical left-handed sc in a conserved cc segment of trimeric autotransp. adhes.3H7X.pdbOpens external link in new windowPDB
CGN4 mutantCGN4 leucine zipper mutant with three IXXNTXX motifs coordinating chloride and nitrate2WQ3.pdbOpens external link in new windowPDB
CGN4 mutantCGN4 leucine zipper mutant with three IXXNTXX motifs coordinating iodide2WQ2.pdbOpens external link in new windowPDB
CGN4 mutantCGN4 leucine zipper mutant with three IXXNTXX motifs coordinating bromide2WQ1.pdbOpens external link in new windowPDB
CGN4 mutantCGN4 leucine zipper mutant with three IXXNTXX motifs coordinating chloride2WQ0.pdbOpens external link in new windowPDB
CGN4 mutantCGN4 leucine zipper mutant with two VXXNXXX motifs coordinating chloride2WPZ.pdbOpens external link in new windowPDB
CGN4 mutantCGN4 leucine zipper mutant with one VXXNXXX motif coordinating chloride2WPY.pdbOpens external link in new windowPDB
Sada K3B-V2Salmonella Enterica Sada 483-523 fused to CGN-4 adaptors2WPS.pdbOpens external link in new windowPDB
Sada K3B-V1Salmonella Enterica Sada 483-523 fused to CGN-4 adaptors2WPR.pdbOpens external link in new windowPDB
Sada K3Salmonella Enterica Sada 479-519 fused to CGN-4 adaptors2WPQ.pdbOpens external link in new windowPDB
ARC-NARC-NΔcc (78-227) from Rhodococcus erythropolis2WFW.pdbOpens external link in new windowPDB
PAN-NProteasome-activating nucleotidase (PAN) N-domain (57-134) from Archaeoglobus fulgidus fused to GCN42WG5.pdbOpens external link in new windowPDB
PAN-N (P61A)Proteasome-activating nucleotidase (PAN) N-domain (57-134) from Archaeoglobus fulgidus fused to GCN42WG6.pdbOpens external link in new windowPDB
SpoVT-FL Crystal Structure of B. Subtilis SpoVT2W1T.pdbOpens external link in new windowPDB
SpoVT-CT domainCrystal Structure of the C-Terminal Domain of B. Subtilis SpoVT2W1R.pdbOpens external link in new windowPDB
BadAStructure of two domains of the head of the Bartonella adhesin BadA3D9X.pdbOpens external link in new windowPDB
Mj0056Riboflavin Kinase Mj0056 from Methanocaldococcus Jannaschii in Complex with PO42VBS.pdbOpens external link in new windowPDB
Mj0056Riboflavin Kinase Mj0056 from Methanocaldococcus Jannaschii in Complex with CDP and PO42VBT.pdbOpens external link in new windowPDB
Mj0056Riboflavin Kinase Mj0056 from Methanocaldococcus Jannaschii in Complex with CDP2VBU.pdbOpens external link in new windowPDB
Mj0056Riboflavin Kinase Mj0056 from Methanocaldococcus Jannaschii in Complex with CDP and FMN2VBV.pdbOpens external link in new windowPDB

NMR structures

NameDescriptionDownloadRSCB PDB
Yme1-NThe N-domain of the AAA metalloproteinase Yme1 from Saccharomyces cerevisiae2MV3.pdbOpens external link in new windowPDB
FtsH-NThe solution structure of the FtsH periplasmic N-domain2MUY.pdbOpens external link in new windowPDB
A291F variantThe solution structure of the HAMP domain of the hypothetical transmembrane receptor Af1503 2L7I.pdbOpens external link in new windowPDB
Af1503 HAMPThe solution structure of the HAMP domain of the hypothetical transmembrane receptor Af15032L7H.pdbOpens external link in new windowPDB
A219F varSolution structure of the chimeric Af1503 HAMP-EnvZ DHp homodimer; A219F variant2LFS.pdbOpens external link in new windowPDB
DHp HomDimSolution structure of the chimeric Af1503 HAMP-EnvZ DHp homodimer2LFR.pdbOpens external link in new windowPDB
Mj0056 Solution structure of Mj0056 2P3M.pdbOpens external link in new windowPDB
PhS018 The solution structure of PHS018 from Pyrococcus horikoshii (22 models)2GLW.pdbOpens external link in new windowPDB
AbrBThe Solution Structure Of The N-Domain Of The Transcription Factor AbrB (22 models)1YSF.pdbOpens external link in new windowPDB
AbrBThe Solution Structure Of The N-Domain Of The Transcription Factor AbrB (mean) 1YFB.pdbOpens external link in new windowPDB

Computational models

NameDescriptionDownload
Plasm.Hsp101Hexameric model of Plasmodium Hsp101 assembled from monomers modeled by homology to 1QVR PfClpB-6mer.pdb
Thermus ClpBHexameric model of Thermus thermophilus ClpB based on the monomeric structure 1QVRClpBmod.pdb
ApoptosomeRing model of the apoptosome. The monomer of Apaf-1 (1Z6T) was modeled as a heptameric ring structure and placed in the center of the domain model by C. Akey and coworkers (PubMed)Apopt.mod.pdb
BadA Model structure of the full head of the BadA fiber BadAhmod.pdb
YadANew model structure of the full YadA fiberYadAmodv2.pdb
YadAOld model structure of the full YadA fiber YadAmod.pdb
OmpWModel structure of the outer membrane beta barrel protein OmpW OmpW mod.pdb