Software
| Title | Description | Download | |
| AlnEdit |  | Alignment editor (Fasta, Clustal, Stockholm, Phylip, Treecon format) | FTP |
| BLATview |  | Graphical display of BLAT results | FTP |
| CLANS |  | Graph layout of protein sequence pairwise similarities in 2D or 3D | FTP |
| HH-suite | Sensitive sequence searching by HMM-HMM comparision | FTP | |
| JTreeview |  | Tree viewer (Newick format) | FTP |
| PHAT |  | Phylome analysis tool (part of PhyloGenie) | FTP |
| PhyloGenie |  | Phylome generation and analysis tool | FTP |