EU Screen
Dr. Brigitte Walderich
In 2005-2006 a large scale ENU screen for zebrafish mutants was carried out that was part of the ZF-MODELS EU Integrated Project. This screen was organised by Brigitte Walderich and supported by European Commission funds as well as from Novartis Inc. In this screen a large number of European researchers participated for several months each to screen for their phenotypes of interest. The screen protocol was similar to previous screens performed in the lab in 1993 and 2000: Following ENU mutagenesis of males, families were established from F1 progeny. Brother-sister matings were performed and resulting egg clutches divided into 4 batches which were successively screened with several assays, the last assay being invasive. The assays that minimally interfered with each other were attributed to the same individual batches, in order to allow an optimal yield of different mutants. One clutch from each family was raised to adulthood and screened by members of the CNV lab for various adult traits. In total, 6000 families were raised and screened, and visiting researchers participated by screening 1-2000 families each. The putative mutants were confirmed in a subsequent egg lay, or outcrossed and reidentified and further characterised in the next generation. Mapping and positional cloning is performed in collaboration with the Zebrafish Genomics Unit in the department.
Larval screen (Department 3 assays)
|
Organ screened |
Screen assay |
genomes screened |
mutants confirmed / total |
Scientists involved |
|
Lateral line |
Alkaline phosphatase stain, 4 dpf |
950 |
? / 22 |
Darren Gilmour, Petra Haas, |
|
Macrophage migration |
Neutral red stain, |
1100 |
35 / 96 |
Francesca Peri, Katrin Henke, Muriel Tauzin, Philippe Herbomel |
|
Larval regeneration |
Fin clipped, 3 dpf |
900 |
26 / 123 |
Caghan Kizil, Christopher Antos |
|
Satellite cells |
Pax7 – antibody stain, 3 dpf |
1000 |
13 / 23 |
Sascha Dembski, Jana Krauß |
|
Larval skin |
Morphological screen, 5 dpf |
1500 |
23 / 48 |
Mahendra Sonawane |
Larval screen (visiting scientists assays)
|
Organ screened |
Screen assay |
genomes screened |
mutants total* |
Scientists involved (PI) |
|
Astrocytes |
ISH, 3 dpf |
1600 |
34 |
Francesco Argenton (Padova) |
|
Eyes ERG |
Electroretinogram, 5 dpf |
930 |
15 |
Stephan Neuhauss (Zurich) |
|
Eyes movement |
Eye movement, 5 dpf |
500 |
52 |
Stephan Neuhauss (Zurich) |
|
Heart morphology |
Morphological screen, 5 dpf |
1400 |
117 |
Jeroen Bakkers (Utrecht) |
|
Histaminergic neurons |
Antibody stain against galanin, 3 dpf |
520 |
1 |
Pertti Panula (Helsinki) |
|
Inflammation |
Morphological after fin clipping, 3 dpf |
920 |
62 |
Steve Renshaw (Sheffield) |
|
Light induction |
ISH, 5 dpf, after light treatment |
1300 |
96 |
Nicholas Foulkes (MPI EB) |
|
Mauthner cells |
Antibody stain, 28 hpf |
620 |
17 |
Patrick Blader (Strasbourg) |
|
Mph migration |
Neutral red stain, 3 – 4 dpf |
1100 |
96 |
Francesca Peri, Philippe Herbomel (Paris) |
|
Muscle stain |
Antibody stain, 3 dpf |
520 |
17 |
Holger Knaut (New York) |
|
Neutrophils |
Sudan black stain, 4 dpf |
530 |
42 |
Philippe Herbomel (Paris) |
|
Pancreas |
ISH, 3 dpf |
1100 |
75 |
Dirk Meyer (Freiburg) |
|
Pharyngeal taste buds |
Antibody stain against calretinin, 3 dpf |
460 |
10 |
Frederic Rosa (Paris) |
|
Pituitary screen |
ISH, 3 and 5 dpf |
1020 |
54 |
Matthias Hammerschmidt (Freiburg) |
|
Primary motoneurons |
Znp monoclonal antibody stain, 28 hpf |
470 |
24 |
Frederik Rosa (Paris) |
|
Serotonergic system |
ISH against tphR, 3 dpf |
960 |
26 |
Laure Bally-Cuif (Neuherberg) |
|
Dopaminergic neurons |
ISH against Tyroxin hydroxylase, 3 dpf |
1200 |
57 |
Wolfgang Driever (Freiburg) |
|
Wound healing |
Morphological screen after wounding, 5 dpf |
800 |
93 |
Matthias Hammerschmidt (Freiburg) |
Adult screen (Department 3 assays)
|
Organ screened |
Screen assay |
genomes screened |
mutants total* |
Scientists involved |
|
Juvenile skin |
Morphological screen, |
830 |
9 |
Mahendra Sonawane |
|
Pigmentation |
Morphological screen, week 6 - 11 |
1120 |
38 |
Hans Georg Frohnhöfer |
|
Regeneration 2 |
Finclip, week 9 |
1120 |
92 |
Christopher Antos |
|
Scales |
Alizarin red stain, week 12 |
1120 |
66 |
Nikolas Rohner, Matthew Harris |
|
Fins |
Alizarin red stain, week 12 |
1120 |
32 |
Matthew Harris |
|
Skull |
Alizarin red stain, week 12 |
1120 |
46 |
Peter Konstantinidis, Matthew Harris |
|
Gonad development |
Histological screen, week 12 |
850 |
87 |
Kellee Siegfried |
Adult screen (visiting scientists assays)
|
Organ screened |
Screen assay |
genomes screened |
mutants total* |
Scientists involved |
|
Heart morphology |
Morphological screen, week 12 |
190 |
15 |
Jeroen Bakkers (Utrecht) |
|
Amphetamine addiction |
Dominant behavioural screen after administration of amphetamine, >week 20 |
n.d. |
6 |
Laure Bally-Cuif (Neuherberg) |
*: before confirmation
Personnel:
- Dr. Brigitte Walderich Project coordinator
- Dr. Christopher Antos Postdoc
- Dr. Hans Georg Frohnhöfer Staff scientist
- Dr. Darren Gilmour Project leader
- Dr. Matthew Harris Postdoc
- Dr. Jana Krauß Postdoc
- Dr. Francesca Peri Postdoc
- Dr. Kellee Siegfried Postdoc
- Dr. Mahendra Sonawane Postdoc
- Sascha Dembski PhD student
- Petra Haas PhD student
- Katrin Henke PhD student
- Caghan Kizil PhD student
- Beate Breitinger Technician
- Maria Geisler Technician
- Michaela Schuppe Technician
- Christian Weiler Technician
- Ieda Santana-Stamm Sperm freezing
- Willi Ankele Fish maintenance
- Edith Haug Fish maintenance
- Dirk Jakob Fish maintenance
- Dieter Labusch Fish maintenance
- Salvatore Giarmana Fish maintenance
- Mario Pezzuti Fish maintenance
Key publication:
Haffter, P., Granato, M., Brand, M., Mullins, M. C., Hammerschmidt, M., Kane, D. A., Odenthal, J., van Eeden, F. J. M., Jiang, Y., Heisenberg, C., Kelsh, R. N., Furutani-Seiki, M., Vogelsang, E., Beuchle, D., Schach, U., Fabian, C. and Nüsslein-Volhard, C. (1996): The identification of genes with unique and essential functions in the development of the zebrafish, Danio rerio. Development 123, 1–36.