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EU Screen

Dr. Brigitte Walderich

In 2005-2006 a large scale ENU screen for zebrafish mutants was carried out  that was part of the ZF-MODELS EU Integrated Project. This screen was organised by Brigitte Walderich and supported by European Commission funds as well as from Novartis Inc. In this screen a large number of European researchers participated for several months each to screen for their phenotypes of interest. The screen protocol was similar to previous screens performed in the lab in 1993 and 2000: Following ENU mutagenesis of males, families were established from F1 progeny. Brother-sister matings were performed and resulting egg clutches divided into 4 batches which were successively screened with several assays, the last assay being invasive. The assays that minimally interfered with each other were attributed to the same individual batches, in order to allow an optimal yield of different mutants. One clutch from each family was raised to adulthood and screened by members of the CNV lab for various adult traits. In total, 6000 families were raised and screened, and visiting researchers participated by screening 1-2000 families each. The putative mutants were confirmed in a subsequent egg lay, or outcrossed and reidentified and further characterised in the next generation. Mapping and positional cloning is performed in collaboration with the Zebrafish Genomics Unit in the department.

Larval screen (Department 3 assays)

Organ screened

Screen assay

genomes screened

mutants confirmed / total

Scientists involved

Lateral line

Alkaline phosphatase stain, 4 dpf

950

? / 22

Darren Gilmour, Petra Haas,
Gulcin Cakan

Macrophage migration

Neutral red stain,
3 – 4 dpf

1100

35 / 96

Francesca Peri, Katrin Henke, Muriel Tauzin, Philippe Herbomel

Larval regeneration

Fin clipped, 3 dpf

900

26 / 123

Caghan Kizil, Christopher Antos

Satellite cells

Pax7 – antibody stain, 3 dpf

1000

13 / 23

Sascha Dembski, Jana Krauß

Larval skin

Morphological screen, 5 dpf

1500

23 / 48

Mahendra Sonawane


Larval screen (visiting scientists assays)

Organ screened

Screen assay

genomes screened

mutants total*

Scientists involved (PI)

Astrocytes

ISH, 3 dpf

1600

34

Francesco Argenton (Padova)

Eyes ERG

Electroretinogram, 5 dpf

930

15

Stephan Neuhauss (Zurich)

Eyes movement

Eye movement, 5 dpf

500

52

Stephan Neuhauss (Zurich)

Heart morphology

Morphological screen, 5 dpf

1400

117

Jeroen Bakkers (Utrecht)

Histaminergic neurons

Antibody stain against galanin, 3 dpf

520

1

Pertti Panula (Helsinki)

Inflammation

Morphological after fin clipping, 3 dpf

920

62

Steve Renshaw (Sheffield)

Light induction

ISH, 5 dpf, after light treatment

1300

96

Nicholas Foulkes (MPI EB)

Mauthner cells

Antibody stain, 28 hpf

620

17

Patrick Blader (Strasbourg)

Mph migration

Neutral red stain, 3 – 4 dpf

1100

96

Francesca Peri, Philippe Herbomel (Paris)

Muscle stain

Antibody stain, 3 dpf

520

17

Holger Knaut (New York)

Neutrophils

Sudan black stain, 4 dpf

530

42

Philippe Herbomel (Paris)

Pancreas

ISH, 3 dpf

1100

75

Dirk Meyer (Freiburg)

Pharyngeal taste buds

Antibody stain against calretinin, 3 dpf

460

10

Frederic Rosa (Paris)

Pituitary screen

ISH, 3 and 5 dpf

1020

54

Matthias Hammerschmidt (Freiburg)

Primary motoneurons

Znp monoclonal antibody stain, 28 hpf

470

24

Frederik Rosa (Paris)

Serotonergic system

ISH against tphR, 3 dpf

960

26

Laure Bally-Cuif (Neuherberg)

Dopaminergic neurons

ISH against Tyroxin hydroxylase, 3 dpf

1200

57

Wolfgang Driever (Freiburg)

Wound healing

Morphological screen after wounding, 5 dpf

800

93

Matthias Hammerschmidt (Freiburg)

Adult screen (Department 3 assays)

Organ screened

Screen assay

genomes screened

mutants total*

Scientists involved

Juvenile skin

Morphological screen,
week 6

830

9

Mahendra Sonawane

Pigmentation

Morphological screen, week 6 - 11

1120

38

Hans Georg Frohnhöfer

Regeneration 2

Finclip, week 9

1120

92

Christopher Antos

Scales

Alizarin red stain, week 12

1120

66

Nikolas Rohner, Matthew Harris

Fins

Alizarin red stain, week 12

1120

32

Matthew Harris

Skull

Alizarin red stain, week 12

1120

46

Peter Konstantinidis, Matthew Harris

Gonad development

Histological screen, week 12

850

87

Kellee Siegfried

Adult screen (visiting scientists assays)

Organ screened

Screen assay

genomes screened

mutants total*

Scientists involved

Heart morphology

Morphological screen, week 12

190

15

Jeroen Bakkers (Utrecht)

Amphetamine addiction

Dominant behavioural screen after administration of amphetamine, >week 20

n.d.

6

Laure Bally-Cuif (Neuherberg)

*: before confirmation

Personnel:
  • Dr. Brigitte Walderich Project coordinator
  • Dr. Christopher Antos Postdoc
  • Dr. Hans Georg Frohnhöfer Staff scientist
  • Dr. Darren Gilmour Project leader
  • Dr. Matthew Harris Postdoc
  • Dr. Jana Krauß Postdoc
  • Dr. Francesca Peri Postdoc
  • Dr. Kellee Siegfried Postdoc
  • Dr. Mahendra Sonawane Postdoc
  • Sascha Dembski PhD student
  • Petra Haas PhD student
  • Katrin Henke PhD student
  • Caghan Kizil PhD student
  • Beate Breitinger Technician
  • Maria Geisler Technician
  • Michaela Schuppe Technician
  • Christian Weiler Technician
  • Ieda Santana-Stamm Sperm freezing
  • Willi Ankele Fish maintenance
  • Edith Haug Fish maintenance
  • Dirk Jakob Fish maintenance
  • Dieter Labusch Fish maintenance
  • Salvatore Giarmana Fish maintenance
  • Mario Pezzuti Fish maintenance

Collaborations:
Valerie Fleisch, Prof. Dr. Stephan Neuhauss (PI), ETH Zürich, Switzerland
Dr. Tom Carney, Dr. Hansmartin Pogoda, Prof. Dr. Matthias Hammerschmidt (PI), MPI for Immune Biology, Freiburg
Heiko Löhr, Monica Srivastava, Hu Zhi-Lian, Prof. Dr. Wolfgang Driever (PI) University Freiburg
Hari Ramachandran, Prof. Dr. Dirk Meyer (PI), University Freiburg
Dr.Jovica Ninkovic, Christian Stigloher, Dr. Christina Lillesaar, Prof. Dr. Laure Bally-Cuif (PI), GSF Neuherberg
Muriel Tauzin, Emi Murayama, Prof. Dr. Phillippe Herbomel (PI), Institute Pasteur, Paris, France
Manon Verhoeven, Ruben Postel, Emma de Pater, Dr. Jeroen Bakkers, Plasterk Lab, Utrecht
Jane Martin, Prof. Dr. Steve Renshaw (PI), University of Sheffield, UK
Dr. Marika Kapsimali, Riadh Lobbard, Prof. Dr. Frederik Rosa (PI), INSERM, Paris
Dr. Patrick Blader, Virginie Esain, INSERM, Paris
Dr. Piotr Podladz, Ville Salinnen, Prof. Dr. Pertti Panula,University of Helsinki, Finland
Dr. Kajohri Lahiri, Dr. Daniela Vallone, Prof. Dr. Nick Foulkes, MPI EB, Tübingen, Germany

 


Key publication:

Haffter, P., Granato, M., Brand, M., Mullins, M. C., Hammerschmidt, M., Kane, D. A., Odenthal, J., van Eeden, F. J. M., Jiang, Y., Heisenberg, C., Kelsh, R. N., Furutani-Seiki, M., Vogelsang, E., Beuchle, D., Schach, U., Fabian, C. and Nüsslein-Volhard, C. (1996): The identification of genes with unique and essential functions in the development of the zebrafish, Danio rerio. Development 123, 1–36.



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last modified 2010-03-08