Slane D, Bürgel P, Bayer M (2017) Staining and Clearing of Arabidopsis Reproductive Tissuefor Imaging of Fluorescent Proteins. In A Schmidt, eds, Plant Germline Development: Methods and Protocols. Springer New York, New York, NY, pp 87-9

Slane D, Reichardt I, El Kasmi F, Bayer M, Jürgens G (2017) Evolutionarily diverse SYP1 Qa-SNAREs jointly sustain pollen tube growth in Arabidopsis. Plant J. doi: 10.1111/tpj.13659

Slane D, Bayer M (2017) Cell Type-Specific Gene Expression Profiling Using Fluorescence-Activated Nuclear Sorting. In K Kaufmann, B Mueller-Roeber, eds, Plant Gene Regulatory Networks: Methods and Protocols. Springer New York, New York, NY, pp 27-35

Bayer M, Slane D, Jürgens G (2017) Early plant embryogenesis - dark ages or dark matter? Curr Opin Plant Biol 35:30-36

Musielak TJ, Bürgel P, Kolb M, Bayer M (2016). Use of SCRI Renaissance 2200 (SR2200) as a Versatile Dye for Imaging of Developing Embryos, Whole Ovules, Pollen Tubes and Roots. Bio-protocol 6(18): e1935.

Musielak TJ, Slane D, Liebig C, Bayer M (2016) A Versatile Optical Clearing Protocol for Deep Tissue Imaging of Fluorescent Proteins in Arabidopsis thaliana. PLoS ONE 11(8): e0161107

Bayer M, Juergens G (2016) Frühe Embryonalentwicklung von Arabidopsis. Jahrbuch2015/2016 doi:10.17617/1.Z

Musielak TJ, Schenkel L, Kolb M, Henschen A, Bayer M (2015) A simple and versatile cell wall staining protocol to study plant reproduction. Plant Reprod doi:10.1007/s00497-015-0267-1

Slane D, Kong J, Schmid M, Jürgens G, and Bayer M (2015) Profiling of embryonic nuclear vs. cellular RNA in Arabidopsis thaliana. Genomics Data 4:96-98

Babu Y and Bayer M (2014) Plant Polygalacturonases Involved in Cell Elongation and Separation - The Same but Different? Plants 3(4):613-623

Slane D, Kong J, Berendzen KW, Kilian J, Henschen A, Kolb M, Schmid M, Harter K, Mayer U, De Smet I, Bayer M, and Jürgens G (2014) Cell type-specific transcriptome analysis in the early Arabidopsis thaliana embryo. Development 141:4831-4840

Bayer M (2014) Botany. Patterning cues from the altruistic sibling. Science 344(6180):158-9.

Musielak TJ and Bayer M (2014) YODA signalling in the early Arabidopsis embryo. Biochem Soc Trans 42, 408-412

Babu Y, Musielak TJ, Henschen A, Bayer M (2013) Suspensor length determines developmental progression of the embryo in Arabidopsis thaliana. Plant Physiol 162(3), 1448-58

Rademacher EH, Lokerse AS, Schlereth A, Llavata-Peris CI, Bayer M, Kientz M, Freire Rios A, Borst JW, Lukowitz W, Jürgens G, Weijers D (2012) Different auxin response machineries control distinct cell fates in the early plant embryo. Dev Cell 22, 211-222.

Jeong S, Bayer M, Lukowitz W (2011) Taking the very first steps: from polarity to axial domains in the early Arabidopsis embryo. J Exp Bot 62: 1687-1697

Nawy T, Bayer M, Mravec J, Friml J, Birnbaum KD, Lukowitz W (2010) The GATA factor HANABA TARANU is required to position the proembryo boundary in the early Arabidopsis embryo. Dev Cell 19, 103-113

Schwab R, Maizel A, Ruiz-Ferrer V, Garcia D, Bayer M, Voinnet O, Martienssen R (2009) Endogenous TasiRNAs Mediate Non-cell Autonomous Effects on Gene Regulation in Arabidopsis thaliana. PLoS One 4, e5980

Bayer M, Nawy T, Giglione C, Galli M, Meinnel T, Lukowitz W (2009) Paternal control of embryonic patterning in Arabidopsis thaliana. Science 323, 1485-1488

Nawy T, Lukowitz W, Bayer M (2008) Talk global, act local – patterning the Arabidopsis embryo. Curr Opin Plant Biol 11, 28-33

Bayer M, Hess D (2005) Restoring full pollen fertility in transgenic male-sterile tobacco (Nicotiana tabacum L.) by Cre-mediated site-specific recombination. Mol  Breeding 15, 193-203.